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Design Book


Please contact Dr. Koch for PDF copies of the articles below if you do not have electronic access otherwise.

Please also see Dr. Koch's Google Scholar profile.

Newest first. * = co-first author. Koch lab members in red.


  • A.M. Shuppara, G.C. Padron, A. Sharma, Z. Modi, M.D. Koch, J.E. Sanfilippo (2024) "Fluid flow overcomes antimicrobial resistance by boosting delivery". bioRxiv.

  • V.L. Taylor, M. Shah, P.H. Patel, A. Yusuf, C.M. Burk, Z. Gitai, A.R. Davidson, M.D. Koch, K.L. Maxwell (2024) "Prophages block cell surface receptors to ensure survival of their viral progeny". bioRxiv.

  • E. Han, C. Fei, R. Alert, K. Copenhagen, M.D. Koch, N.S. Wingreen, J.W. Shaevitz (2023) "Local polar order controls mechanical stress and triggers layer formation in developing Myxococcus xanthus colonies". arXiv.

Independent lab







  • M.D. Koch, C. Fei, N.S. Wingreen, J.W. Shaevitz, and Z. Gitai (2021) "Competitive binding of independent extension and retraction motors explains the quantitative dynamics of type IV pili" PNAS

  • R.J. Scheffler, Y. Sugimoto, B.P. Bratton, C.K. Ellison, M.D. Koch, M.S. Donia, Z. Gitai (2021) "Pseudomonas aeruginosa detachment from surfaces via a self-made small molecule". Journal of Biological Chemistry


  • A. Simsek, A. Braeutigam, M.D. Koch, J.W. Shaevitz, Y. Huang, G. Gompper, B. Sabass (2019) "Substrate-rigidity dependent migration of an idealized twitching bacterium". Soft Matter

  • J.E. Sanfilippo*, A. Lorestani*, M.D. Koch, B.P. Bratton, A. Siryaporn, H.A. Stone, Z. Gitai (2019) "Microfluidic-based transcriptomics reveal force-independent bacterial rheosensing". Nature Microbiology



  • J. Roth*, M.D. Koch*, and A. Rohrbach (2018) "Dynamics of a protein chain motor driving helical bacteria under stress". Biophysical Journal

  • M.D. Koch and A. Rohrbach (2018) "Label-free imaging and bending analysis of microtubules by ROCS microscopy and optical trapping". Biophysical Journal

  • M.D. Koch, N. Schneider, P. Nick, and A. Rohrbach (2017) "Single microtubules and small networks become significantly stiffer on short time-scales upon mechanical stimulation". Scientific Reports

  • M.D. Koch and A. Rohrbach (2014) "How to calibrate an object-adapted optical trap for force sensing and interferometric shape tracking of asymmetric structures". Optics Express

  • M.D. Koch, J. Roth, and A. Rohrbach (2014) "Bakterien gefangen im Licht". BIOspektrum (Invited news article)

  • M.D. Koch and A. Rohrbach (2012) "Object-adapted optical trapping and shape-tracking of energy-switching helical bacteria". Nature Photonics

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